Director
Publications
Molecular Biology Lab
Proteomics
Metabolomics
Infractructure
Phd
funding
Collaborators
visitors gallery
Trainees
 
Karthick Vasudevan, Ph.D.
Faculty Scientist
 
Institute of Bioinformatics
Discoverer Building, International Tech Park, Whitefield
Bangalore - 560 066
E-mail: karthick at ibioinformatics dot org
Phone: 080-6898 2140
 
Education
Ph.D. in Bioinformatics, VIT University in Vellore, India
M.Sc. Biomedical Genetics, VIT University in Vellore, India
 

Positions Held
Faculty Scientist, Institute of Bioinformatics, Bangalore, India, April 2024-present
Associate Professor, REVA University, Bangalore, India, July 2023-April 2024 
Assistant Professor, REVA University, Bangalore, India, March 2021-June 2023  
Research Associate, Department of clinical microbiology, CMC, Vellore, July 2018-February 2021 
Postdoctoral Researcher, School of Chinese medicine, Hong Kong Baptist University, July 2016-June 2018 
Postdoctoral Researcher, Department of computer science, Hong Kong Baptist University, October 2014-September 2015 
 

Area of Specialization
Antimicrobial resistance
Bioinformatics
Computational biology
Microbial genomics
Artificial Intelligence/ Machine Learning
Next generation sequencing
 

Publications

Research papers: 86
Dhanushkumar, T., Hebbar, S. R., Selvam, P. K., Vasudevan, K. (2025). VaxOptiML: leveraging machine learning for accurate prediction of MHC-I and II epitopes for optimized cancer immunotherapy. Immunogenetics. 77(1):15-Jan [PubMed]

Elavarasu, S. M., Dey, H., Vasudevan, K., Doss, C. G. P.Vijayakumar, S., Swetha, R. (2024). Decoding the complex genetic network of antimicrobial resistance in campylobacter jejuni using advanced gene network analysis. Gene Expression. 23(2):106-115 [PubMed]

G., Bakthavatchalam, Y. D., Vasudevan, K., Shankar, B. A., Kirubananthan, A., Walia, K. (2024). Genomic investigation unveils colistin resistance mechanism in carbapenem-resistant Acinetobacter baumannii clinical isolates. Microbiology Spectrum. 12(2):e02511-23 [PubMed]

Dhanushkumar, T., kumar Selvam, P., Santhosh, M. E., Vasudevan, K., Zayed, H., & Kamaraj, B. (2024). Rational design of a multivalent vaccine targeting arthropod-borne viruses using reverse vaccinology strategies. International Journal of Biological Macromolecules. 258:128753 [PubMed]

Dhanushkumar, T., Santhosh, M. E., Selvam, P. K., Rambabu, M., Dasegowda, K. R., Vasudevan, K., & Doss, C. G. P. (2024). Advancements and hurdles in the development of a vaccine for triple-negative breast cancer: A comprehensive review of multi-omics and immunomics strategies. Life Sciences. 337:122360 [PubMed]

Dhanushkumar, T., Kamaraj, B., Vasudevan, K., Gopikrishnan, M., Dasegowda, K. R., & Rambabu, M. (2024). Structural immunoinformatics approach for rational design of a multi-epitope vaccine against triple negative breast cancer. International Journal of Biological Macromolecules. 243:125209 [PubMed]

Anusha, M., Tejaswini, V., Kumar, S. U., Prashantha, C. N., Vasudevan, K., & Doss, C. G. P. (2024). Gene network interaction analysis to elucidate the antimicrobial resistance mechanisms in the Clostridium difficile Microbial Pathogenesis. 178:106083 [PubMed]

Jacob, J. J., Pragasam, A. K., Vasudevan, K., Velmurugan, A., Priya Teekaraman, M., Priya Thirumoorthy, T., Mutreja, A. (2023). Genomic analysis unveils genome degradation events and gene flux in the emergence and persistence of S. Paratyphi A lineages. PLoS Pathogens. 19:4(e1010650) [PubMed]

Dey, H., Vasudevan, K., Dasegowda, K. R., Rambabu, M., & Prashantha, C. N. (2022). An integrated gene network analysis to decode the multi-drug resistance mechanism in Klebsiella pneumoniae. Microbial Pathogenesis. 173:105878 [PubMed]

Ramamurthy, T., Pragasam, A. K., Taylor-Brown, A., Will, R. C., Vasudevan, K., Das, B., Mutreja, A. (2022). Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic Nature Communications. 13:1(3864) [PubMed]

Vijayakumar, S., Jacob, J. J., Vasudevan, K., Mathur, P., Ray, P., Neeravi, A., Veeraraghavan, B. (2022). Genomic Characterization of Mobile Genetic Elements Associated With Carbapenem Resistance of Acinetobacter baumannii From India Frontiers in Microbiology. 13:(869653) [PubMed]

Shankar, C., Vasudevan, K., Jacob, J. J., Baker, S., Isaac, B. J., Neeravi, A. R., Veeraraghavan, B. (2022). Hybrid Plasmids Encoding Antimicrobial Resistance and Virulence Traits Among Hypervirulent Klebsiella pneumoniae ST2096 in India. Frontiers in Cellular and Infection Microbiology. 12:(875116) [PubMed]

Will, R.C., Ramamurthy, T., Sharma, N.C., Veeraraghavan, B., Sangal, L., Haldar, P., Pragasam, A.K., Vasudevan, K., Kumar, D., Das, B. and Heinz, E. (2021). Spatiotemporal persistence of multiple, diverse clades and toxins of Corynebacterium diphtheriae. Nature Communications. 12:1(1500) [PubMed]

Opintan, J.A., Will, R.C., Kuma, G.K., Osei, M., Akumwena, A., Boateng, G., Owusu-Okyere, G., Antwi, L., Opare, D., Pragasam, A.K. & Vasudevan, K. (2021). Phylogenetic and antimicrobial drug resistance analysis of Vibrio cholerae O1 isolates from Ghana Microbial Genomics. 7:10(668) [PubMed]

Shankar, C., Basu, S., Lal, B., Shanmugam, S., Vasudevan, K., Mathur, P., Veeraraghavan, B. (2021). Aerobactin Seems To Be a Promising Marker Compared With Unstable RmpA2 for the Identification of Hypervirulent Carbapenem-Resistant Klebsiella pneumoniae: In Silico and In Vitro Evidence. Frontiers in Cellular and Infection Microbiology. 11:(709681) [PubMed]